Arginine-aminoglycoside conjugates that bind to HIV transactivation responsive element RNA in vitro

Abstract 

HIV gene expression is crucially dependent on binding of the viral Tat protein to the transactivation RNA response element. A number of synthetic Tat-transactivation responsive element interaction inhibitors of peptide/peptoid nature were described as potential antiviral drug prototypes. We present a new class of peptidomimetic inhibitors, conjugates of l-arginine with aminoglycosides. Using a gel-shift assay and affinity chromatography on an l-arginine column we found that these compounds bind specifically to the transactivation responsive element RNA in vitro with K_d values in the range of 20–400 nM, which is comparable to the K_d of native Tat bound to the transactivation responsive element (10–12 nM). Confocal microscopy studies demonstrated that fluorescein-labelled conjugate penetrates into live cells. High affinity to the transactivation responsive element, low toxicity, and relative simplicity of synthesis make these compounds attractive candidates for antiviral drug design.

Keywords:  Aminoglycoside-arginine conjugate, Transactivation responsive element RNA binder, HIV Tat/transactivation responsive element inhibition, Drug design