FEBS Letters
Volume 514, Issue 1 , Pages 78-83 , 6 March 2002

Functional evidence for D- and T-loop interactions in tmRNA

Edited by Lev Kisselev

  • Sharief Barends

      Affiliations

    • Department of Biochemistry, Leiden Institute of Chemistry, Leiden University, P.O. Box 9502, 2300 RA Leiden, The Netherlands
    • ,
  • Karl Björk

      Affiliations

    • Department of Biochemistry, Leiden Institute of Chemistry, Leiden University, P.O. Box 9502, 2300 RA Leiden, The Netherlands
    • ,
  • Alexander P. Gultyaev

      Affiliations

    • Group Theoretical Biology and Phylogenetics, Institute of Evolutionary and Ecological Sciences, Leiden University, Kaiserstraat 63, 2311 GP Leiden, The Netherlands
    • ,
  • Maarten H. de Smit

      Affiliations

    • Department of Biochemistry, Leiden Institute of Chemistry, Leiden University, P.O. Box 9502, 2300 RA Leiden, The Netherlands
    • ,
  • Cornelis W.A. Pleij

      Affiliations

    • Department of Biochemistry, Leiden Institute of Chemistry, Leiden University, P.O. Box 9502, 2300 RA Leiden, The Netherlands
    • ,
  • Barend Kraal

      Affiliations

    • Department of Biochemistry, Leiden Institute of Chemistry, Leiden University, P.O. Box 9502, 2300 RA Leiden, The Netherlands
    • Corresponding Author InformationCorresponding author. Fax: (31)-71-5274340

Received 1 November 2001 ,Accepted 5 November 2001.

References 

  1. Keiler KC, Waller PR, Sauer RT. Science. 1996;271:990–993
  2. Muto A, Ushida C, Himeno H. Trends Biochem. Sci. 1998;23:25–29
  3. Karzai AW, Roche ED, Sauer RT. Nat. Struct. Biol. 2000;7:449–455
  4. Abo T, Inada T, Ogawa K, Aiba H. EMBO J. 2000;19:3762–3769
  5. Roche ED, Sauer RT. J. Biol. Chem. 2001;23:23
  6. Karzai AW, Susskind MM, Sauer RT. EMBO J. 1999;18:3793–3799
  7. Williams KP, Martindale KA, Bartel DP. EMBO J. 1999;18:5423–5433
  8. Wower IK, Zwieb CW, Guven SA, Wower J. EMBO J. 2000;19:6612–6621
  9. Lee S, Ishii M, Tadaki T, Muto A, Himeno H. RNA. 2001;7:999–1012
  10. Williams KP, Bartel DP. RNA. 1996;2:1306–1310
  11. Felden B, Himeno H, Muto A, McCutcheon JP, Atkins JF, Gesteland RF. RNA. 1997;3:89–103
  12. Hickerson RP, Watkins-Sims CD, Burrows CJ, Atkins JF, Gesteland RF, Felden B. J. Mol. Biol. 1998;279:577–587
  13. Felden B, Hanawa K, Atkins JF, Himeno H, Muto A, Gesteland RF, et al. EMBO J. 1998;17:3188–3196
  14. Komine Y, Kitabatake M, Yokogawa T, Nishikawa K, Inokuchi H. Proc. Natl. Acad. Sci. USA. 1994;91:9223–9227
  15. Li Z, Pandit S, Deutscher MP. Proc. Natl. Acad. Sci. USA. 1998;95:2856–2861
  16. Lin-Chao S, Wei CL, Lin YT. Proc. Natl. Acad. Sci. USA. 1999;96:12406–12411
  17. Srivastava RK, Miczak A, Apirion D. Biochimie. 1990;72:791–802
  18. Barends S, Wower J, Kraal B. Biochemistry. 2000;39:2652–2658
  19. Rudinger-Thirion J, Giegé R, Felden B. RNA. 1999;5:989–992
  20. Stagg SM, Frazer-Abel AA, Hagerman PJ, Harvey SC. J. Mol. Biol. 2001;309:727–735
  21. Zwieb C, Guven SA, Wower IK, Wower J. Biochemistry. 2001;40:9587–9595
  22. Ushida C, Himeno H, Watanabe T, Muto A. Nucleic Acids Res. 1994;22:3392–3396
  23. Liu JC, Liu M, Horowitz J. RNA. 1998;4:639–646
  24. Vorstenbosch EL, Potapov AP, de Graaf JM, Kraal B. J. Biochem. Biophys. Methods. 2000;42:1–14
  25. Williams KP. Nucleic Acids Res. 2000;28:168
  26. Zwieb C, Wower J. Nucleic Acids Res. 2000;28:169–170
  27. Keiler KC, Shapiro L, Williams KP. Proc. Natl. Acad. Sci. USA. 2000;97:7778–7783
  28. Heckman JE, Hecker LI, Schwartzbach SD, Barnett WE, Baumstark B, RajBhandary UL. Cell. 1978;13:83–95
  29. Helm M, Brule H, Friede D, Giegé R, Putz D, Florentz C. RNA. 2000;6:1356–1379
  30. Peterson ET, Blank J, Sprinzl M, Uhlenbeck OC. EMBO J. 1993;12:2959–2967
  31. Asahara H, Nameki N, Hasegawa T. J. Mol. Biol. 1998;283:605–618
  32. Roberts RJ, Lovinger GG, Tamura T, Strominger JL. J. Biol. Chem. 1974;249:4781–4786
  33. Dumas P, Moras D, Florentz C, Giegé R, Verlaan P, Van Belkum A, et al. J. Biomol. Struct. Dyn. 1987;4:707–728
  34. Dreher TW, Goodwin JB. Nucleic Acids Res. 1998;26:4356–4364
  35. Goodwin JB, Dreher TW. Virology. 1998;246:170–178
  36. Gautheret D, Gutell RR. Nucleic Acids Res. 1997;25:1559–1564
  37. Leontis NB, Westhof E. Q. Rev. Biophys. 1998;31:399–455
  38. Masquida B, Westhof E. RNA. 2000;6:9–15
  39. Behlen LS, Sampson JR, DiRenzo AB, Uhlenbeck OC. Biochemistry. 1990;29:2515–2523
  40. Puglisi JD, Putz J, Florentz C, Giegé R. Nucleic Acids Res. 1993;21:41–49
  41. Sampson JR, DiRenzo AB, Behlen LS, Uhlenbeck OC. Biochemistry. 1990;29:2523–2532
  42. Nazarenko IA, Harrington KM, Uhlenbeck OC. EMBO J. 1994;13:2464–2471
  43. Hou YM, Schimmel P. Biochemistry. 1992;31:4157–4160
  44. Herr AJ, Atkins JF, Gesteland RF. EMBO J. 1999;18:2886–2896
  45. Barends S, Karzai AW, Sauer RT, Wower J, Kraal B. J. Mol. Biol. 2001;314:9–21

PII: S0014-5793(02)02306-2

FEBS Letters
Volume 514, Issue 1 , Pages 78-83 , 6 March 2002

Article Tools

* Image Usage & Resolution