FEBS Letters
Volume 576, Issue 3 , Pages 468-476 , 22 October 2004

A flexible approach for understanding protein stability

Edited by Robert B. Russell

  • D.R. Livesay

      Affiliations

    • Department of Chemistry, California State Polytechnic University, Pomona, 3801 W Temple Ave, Pomona, CA 91768, USA
    • These authors contributed equally to this work.
    • ,
  • S. Dallakyan

      Affiliations

    • Department of Physics and Astronomy, California State University, Northridge, 18111 Nordhoff Street, Northridge, CA 91330-8268, USA
    • These authors contributed equally to this work.
    • ,
  • G.G. Wood

      Affiliations

    • Department of Physics and Astronomy, California State University, Northridge, 18111 Nordhoff Street, Northridge, CA 91330-8268, USA
    • ,
  • D.J. Jacobs

      Affiliations

    • Department of Physics and Astronomy, California State University, Northridge, 18111 Nordhoff Street, Northridge, CA 91330-8268, USA
    • Corresponding Author InformationCorresponding author

Received 19 August 2004 ,Accepted 20 September 2004.

References 

  1. Jacobs DJ, Rader AJ, Kuhn LA, Thorpe MF. Proteins. 2001;44:150–165
  2. Hespenheide BM, Rader AJ, Thorpe MF, Kuhn LA. J. Mol. Graph. Model. 2002;21:195–207
  3. Rader AJ, Hespenheide BM, Kuhn LA, Thorpe MF. Proc. Natl. Acad. Sci. USA. 2002;99:3540–3545
  4. Rader AJ, Anderson G, Isin B, Khorana HG, Bahar I, Klein-Seetharaman J. Proc. Natl. Acad. Sci. USA. 2004;101:7246–7251
  5. Jacobs, D.J. and Thorpe, M.F. (1998) US Patent # 6014449
  6. Fields PA. Comp. Biochem. Physiol. A Mol. Integr. Physiol. 2001;129:417–431
  7. Frauenfelder H. Nature. 1989;338:623–624
  8. Gerstein M, Lesk AM, Chothia C. Biochemistry. 1994;33:6739–6749
  9. Janin J, Wodak SJ. Prog. Biophys. Mol. Biol. 1983;42:21–78
  10. Dill KA. J. Biol. Chem. 1997;272:701–704
  11. Mark AE, van Gunsteren WF. J. Mol. Biol. 1994;240:167–176
  12. Gomez J, Hilser VJ, Xie D, Freire E. Proteins. 1995;22:404–412
  13. Jacobs DJ, Dallakyan S, Wood GG, Heckathorne A. Phys. Rev. E. 2003;68:061109
  14. Jacobs DJ, Wood GG. Biopolymers. 2004;75:1–31
  15. Hilser VJ, Freire E. J. Mol. Biol. 1996;262:756–772
  16. Jacobs DJ, Thorpe MF. Phys. Rev. Lett. 1995;75:4051–4054
  17. Jacobs, D.J. and Dallakyan, S. (2004) Biophys. J. (in review)
  18. Lazaridis T, Karplus M. Biophys. Chem. 2003;100:367–395
  19. Dahiyat BI, Gordon DB, Mayo SL. Protein Sci. 1997;6:1333–1337
  20. Hedwig GR, Hinz HJ. Biophys. Chem. 2003;100:239–260
  21. Lifson S, Roig A. J. Chem. Phys. 1961;34:1963–1974
  22. Cooper A. Biophys. Chem. 2000;85:25–39
  23. Socci ND, Onuchic JN, Wolynes PG. Proteins. 1998;32:136–158
  24. Private communication with Jose Onuchic (UCSD)
  25. Plaxco KW, Simons KT, Baker D. J. Mol. Biol. 1998;277:985–994
  26. Panchal SC, Hosur RV. Biochem. Biophys. Res. Commun. 2000;269:387–392
  27. Kelly L, Holladay LA. Biochemistry. 1990;29:5062–5069
  28. Sahu SC, Bhuyan AK, Majumdar A, Udgaonkar JB. Proteins. 2000;41:460–474
  29. Smith DK, Radivojac P, Obradovic Z, Dunker AK, Zhu G. Protein Sci. 2003;12:1060–1072
  30. Bahar I, Wallqvist A, Covell DG, Jernigan RL. Biochemistry. 1998;37:1067–1075
  31. Haliloglu T, Bahar I. Proteins. 1999;37:654–667
  32. Zhang F, Bruschweiler R. J. Am. Chem. Soc. 2002;124:12654–12655
  33. Idiyatullin D, Nesmelova I, Daragan VA, Mayo KH. Protein Sci. 2003;12:914–922
  34. Akashi S, Naito Y, Takio K. Anal. Chem. 1999;71:4974–4980
  35. Radford SE, Dobson CM, Evans PA. Nature. 1992;358:302–307
  36. Bieri O, Kiefhaber T. J. Mol. Biol. 2001;310:919–935
  37. Howarth OW, Lian LY. Biochemistry. 1984;23:3522–3526
  38. Hooke SD, Radford SE, Dobson CM. Biochemistry. 1994;33:5867–5876
  39. Motoshima H, Ueda T, Imoto T. J. Biochem. (Tokyo). 1996;119:1019–1023
  40. Kidera A, Inaka K, Matsushima M, Go N. J. Mol. Biol. 1992;225:477–486
  41. Perl D, Welker C, Schindler T, Schroder K, Marahiel MA, Jaenicke R, et al. Nat. Struct. Biol. 1998;5:229–235
  42. Honda S, Kobayashi N, Munekata E, Uedaira H. Biochemistry. 1999;38:1203–1213
  43. Buczek O, Krowarsch D, Otlewski J. Protein Sci. 2002;11:924–932
  44. Wassenberg D, Welker C, Jaenicke R. J. Mol. Biol. 1999;289:187–193
  45. Wintrode PL, Makhatadze GI, Privalov PL. Proteins. 1994;18:246–253
  46. Clarke J, Hamill SJ, Johnson CM. J. Mol. Biol. 1997;270:771–778
  47. Takano K, Ogasahara K, Kaneda H, Yamagata Y, Fujii S, Kanaya E, et al. J. Mol. Biol. 1995;254:62–76
  48. Robic S, Guzman-Casado M, Sanchez-Ruiz JM, Marqusee S. Proc. Natl. Acad. Sci. USA. 2003;100:11345–11349
  49. Consalvi V, Chiaraluce R, Giangiacomo L, Scandurra R, Christova P, Karshikoff A, et al. Protein Eng. 2000;13:501–507
  50. Todd MJ, Semo N, Freire E. J. Mol. Biol. 1998;283:475–488
  51. Kreimer DI, Malak H, Lakowicz JR, Trakhanov S, Villar E, Shnyrov VL. Eur. J. Biochem. 2000;267:4242–4252
  52. Tjandra N, Feller SE, Pastor RW, Bax A. J. Am. Chem. Soc. 1995;117:12562–12566
  53. Vijay-Kumar S, Bugg CE, Cook WJ. J. Mol. Biol. 1987;194:531–544

PII: S0014-5793(04)01186-X

doi: 10.1016/j.febslet.2004.09.057

FEBS Letters
Volume 576, Issue 3 , Pages 468-476 , 22 October 2004