FEBS Letters
Volume 580, Issue 8 , Pages 2041-2045, 3 April 2006

Disordered domains and high surface charge confer hubs with the ability to interact with multiple proteins in interaction networks

Edited by Takashi Gojobori

  • Ashwini Patil

      Affiliations

    • Institute for Protein Research, Osaka University, 3-2 Yamadaoka, Suita, Osaka 565-0871, Japan
    • Department of Biology, Graduate School of Science, Osaka University, Japan
  • ,
  • Haruki Nakamura

      Affiliations

    • Institute for Protein Research, Osaka University, 3-2 Yamadaoka, Suita, Osaka 565-0871, Japan
    • Corresponding Author InformationCorresponding author. Fax: +81 6 6879 8636/4310.

Received 6 January 2006; received in revised form 24 February 2006; accepted 2 March 2006. published online 09 March 2006.

Abstract 

We investigate the structural properties of hubs that enable them to interact with several partners in protein–protein interaction networks. We find that hubs have more observed and predicted disordered residues with fewer loops/coils, and more charged residues on the surface as compared to non-hubs. Smaller hubs have fewer disordered residues and more charged residues on the surface than larger hubs. We conclude that the global flexibility provided by disordered domains, and high surface charge are complementary factors that play a significant role in the binding ability of hubs.

Abbreviation: PDB, Protein Data Bank

Keywords: Protein–protein interactions, Interaction networks, Hubs, Disordered regions, Surface charge

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PII: S0014-5793(06)00296-1

doi:10.1016/j.febslet.2006.03.003

FEBS Letters
Volume 580, Issue 8 , Pages 2041-2045, 3 April 2006