A conserved DYW domain of the pentatricopeptide repeat protein possesses a novel endoribonuclease activity

Abstract 

Many plant pentatricopeptide repeat (PPR) proteins are known to contain a highly conserved C-terminal DYW domain whose function is unknown. Recently, the DYW domain has been proposed to play a role in RNA editing in plant organelles. To address this possibility, we prepared recombinant DYW proteins and tested their cytidine deaminase activity. However, we could not detect any activity in the assays we used. Instead, we found that the recombinant DYW domains possessed endoribonuclease activity and cleaved before adenosine residues in the RNA molecule. Some DYW-containing PPR proteins may catalyze site-specific cleavage of target RNA species.

Abbreviations: aa, amino acid(s), bp, base pair(s), nt, nucleotide(s), GFP, green fluorescent protein, PCR, polymerase chain reaction, PPR, pentatricopeptide repeat, Trx, thioredoxin, RNase, ribonuclease

Keywords: PPR protein, DYW domain, RNA editing, Endoribonuclease, RNase